自然科学版
陕西师范大学学报(自然科学版)
生命科学
秦艽HMGR基因家族的克隆及序列分析
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郑鹏1, 化文平1,2, 王喆之1*
(1 教育部药用资源与天然药物化学重点实验室; 西北濒危药材资源开发国家工程实验室;陕西师范大学 生命科学学院,陕西 西安 710062; 2 陕西学前师范学院 生物科学与技术系,陕西 西安 710100)
郑鹏,男,博士研究生,主要研究方向为植物生物技术.E-mail:zhengpeng@snnu.edu.cn.*通信作者: 王喆之,男,教授,博士研究生导师.E-mail: zzwang@snnu.edu.cn.
摘要:
研究克隆了秦艽3-羟基-3-甲基戊二酰辅酶A还原酶(HMGR)家族成员的两条基因,并对其序列进行了生物信息学分析.结果显示,两条HMGR基因都包含完整的开放读码(ORF)框,编码蛋白含有HMGR蛋白特有的4个保守的活性位点,与其他植物HMGR蛋白序列具有较高的一致性,都具有跨膜结构域,高级结构类同;GmHMGR1和GmHMGR2分别定位于细胞质膜和线粒体中.表达分析显示, GmHMGR1主要在根和花中表达,而GmHMGR2主要在叶中表达.
关键词:
秦艽; 3-羟基-3-甲基戊二酰辅酶A还原酶(HMGR); 高通量测序; 序列分析
收稿日期:
2012-05-25
中图分类号:
Q274
文献标识码:
A
文章编号:
1672-4291(2012)06-0067-06
基金项目:
国家自然科学基金资助项目(31000134); 陕西省教育厅科研项目(12JK0833); 陕西学前师范学院科研项目(2012KJ044).
Doi:
Cloning and characterization of HMGR genes from Gentiana macrophylla
ZHENG Peng1, HUA Wen-ping1,2, WANG Zhe-zhi1*
(1 Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, College of Life Science, Shaanxi Normal University, Xi′an 710062, Shaanxi, China; 2. Shaanxi Xueqian Normal University, Department of Life Sciences and Technology, Xi′an 710100, Shaanxi, China)
Abstract:
Gentiopicroside, a secoiridoid glycoside, is one of the main pharmacological compounds of traditional Chinese medicine Gentiana. In this study, two Gentiana macrophylla HMGR genes were cloned based on our laboratory′s high-throughput sequencing, and bioinformatics analysis was carried out.The results showed that two HMGR genes both contain the completed ORF, and their encoded proteins with two transmembrane domains and four HMGR protein-specific conserved active sites, high consistency with the other plant in HMGR protein sequences and high structure, but GmHMGR1 and GmHMGR2 locate respectively in the cell plasma membrane and mitochondria, Quantitative PCR analysis showed that GmHMGR1 has high expression levels in the roots and flowers in G. macrophylla, while GmHMGR2 mainly expresses in leaves.
KeyWords:
Gentiana macrophylla; 3-hydroxy-3-methyl-glutaryl-CoA reductase(HMGR); high-throughput sequencing; sequence analysis