自然科学版
陕西师范大学学报(自然科学版)
功能化合物及其生物活性研究专题
转录组分析揭示松乳菇多糖刺激T淋巴细胞增殖的分子机制
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宋志强1,丁祥2,朱淼1,唐贤1,侯怡铃1*
(1西华师范大学 生命科学学院,西南野生动植物资源保护教育部重点实验室,四川 南充 637009;2 西华师范大学 环境科学与工程学院,四川 南充 637009)
侯怡铃,女,教授,硕士生导师,研究方向为生物化学与分子生物学。E-mail:starthlh@126.com
摘要:
以T淋巴细胞为研究材料,采用RNA-Seq测序技术对松乳菇多糖(LDG-A)、脂多糖(LPS)和空白对照作用下的T淋巴细胞进行测序及生物信息学分析,研究松乳菇多糖处理对T淋巴细胞增殖过程中基因表达的影响,并探究该过程中涉及的主要基因和关键通路。结果表明:对照组、松乳菇多糖组和脂多糖组分别获得7.54 G、7.96 G和8.62 G的分析数据,T淋巴细胞在松乳菇多糖组和对照组中有8个极高表达基因,在脂多糖阳性对照组有5个极高表达基因(FPKM>2 200)。差异表达基因分析发现,松乳菇多糖组和对照组之间共存在334个差异表达基因,其中有331个基因上调,3个基因下调。KEGG通路富集结果显示,松乳菇多糖影响T淋巴细胞增值的关键基因主要富集在MAPK、Ras等信号通路中,其中Ras-ERK-MAPK信号通路在松乳菇多糖刺激T淋巴细胞增殖的过程中具有重要作用;该通路中的成纤维细胞生长因子1(Fgf1)、成纤维细胞生长因子受体1(Fgfr1)、血小板衍生生长因子亚单位A(Pdgfa)和ets转录因子ELK1(Elk-1)等基因上调表达,表明松乳菇多糖能够通过Ras-ERK-MAPK信号通路促进T淋巴细胞进行基因表达及增殖。
关键词:
松乳菇多糖;T淋巴细胞;RNA-Seq测序;差异表达基因;Ras-ERK-MAPK信号通路
收稿日期:
2019-12-24
中图分类号:
Q291
文献标识码:
A
文章编号:
1672-4291(2020)05-0001-10
基金项目:
四川省科技厅应用基础重点项目(2018JY0087);四川省科技厅重点研发项目(2018NZ0055);四川省教育厅重大培育项目(16CZ0018)
Doi:
Molecular mechanism of T lymphocyte proliferation stimulated by Lactarius deliciosus Gray polysaccharide based on transcriptome analysis
SONG Zhiqiang1, DING Xiang2, ZHU Miao1, TANG Xian1, HOU Yiling1*
(1 Key Laboratory of Southwest China Wildlife Resources Conservation of Ministry of Education, College of Life Science, China West Normal University, Nanchong 637009, Sichuan, China; 2 College of Environmental Science and Engineering, China West Normal University, Nanchong 637009, Sichuan, China)
Abstract:
T lymphocyte was used as research material and RNA-Seq technology was applied for transcription sequencing of T lymphocyte treated with Lactarius deliciosus Gray polysaccharide (LDG-A), lipopolysaccharide (LPS) and blank control. Bioinformatics analysis was carried out to explore the difference of gene expression in T lymphocyte proliferation affected by LDG-A, as well as the main genes and key pathways involved in this process. RNA-Seq results showed that a total of 7.54 G, 7.96 G and 8.62 G analysis data (clean reads) were obtained from the blank control group, LDG-A group and LPS group, respectively. The gene expression levels indicated that 8 genes in LDG-A group, 5 genes in LPS group and 8 genes in blank control group were highly expressed (FPKM>2 200). Analysis of the differentially expressed genes revealed that there were 334 differentially expressed genes between LDG-A group and control group, of which 331 genes were up-regulated and 3 genes were down-regulated. KEGG pathway enrichment results demonstrated that the key genes related to LDG-A affecting T lymphocyte proliferation were mainly concentrated in metabolic pathway, such as MAPK signaling pathway and Ras signaling pathway. Furthermore, Ras-ERK-MAPK signaling pathway played an important role in the process of T lymphocyte proliferation stimulated by LDG-A. The up-regulated expression of fibroblast growth factor-1 (Fgf1), fibroblast growth factor receptor-1(Fgfr1), platelet-derived growth factor subunit A (Pdgfa) and ETS transcription factor ELK1(Elk-1) in this pathway suggested that LDG-A can promote gene expression and proliferation of T lymphocyte through Ras-ERK-MAPK signaling pathway.
KeyWords:
Lactarius deliciosus Gray polysaccharide(LDG-A); T lymphocyte; RNA-Seq; differentially expressed genes; Ras-ERK-MAPK signaling pathway