自然科学版
陕西师范大学学报(自然科学版)
生命科学
菲牛蛭肠道细菌的群落结构及功能
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刘宇1, 张秀秀1, 管德龙1, 王晓雯2, 许升全1*
(1 陕西师范大学 动物研究所,陕西 西安 710119; 2 上海凌恩生物科技有限公司,上海 201800)
许升全,男,教授,博士生导师,主要从事动物学方面的研究。E-mail:xushengquan@snnu.edu.cn
摘要:
为了揭示肠道细菌对菲牛蛭(Hirudinaria manillensis)消化、代谢等生理活动的影响,采用二代测序技术测定了三个菲牛蛭个体肠道细菌的群落结构并推断了其功能。结果共鉴定出细菌7门,16纲,24目,29科,36属,40个操作分类单元(operation taxonomic units, OTUs);其中优势属分别为色杆菌属(Chromobacterium)、甲基菌属(Methylovorus)和Jonquetella。采用PICRUSt软件对菲牛蛭肠道细菌进行功能预测,结果显示其主要功能依次是膜转运、碳水化合物代谢、氨基酸代谢、细胞迁移、能量代谢、基因复制和修复、辅酶因子和维生素代谢、外源物质降解、细胞进程和信号转导等。
关键词:
菲牛蛭; 肠道细菌; 功能预测; 二代测序技术
收稿日期:
2017-08-30
中图分类号:
Q95-3
文献标识码:
A
文章编号:
1672-4291(2018)04-0071-07
基金项目:
中央高校基本科研业务费专项资金(2016TS057;GK201604008;GK201702010;GK201701006)
Doi:
The community structure and function of gut bacteria of the leech Hirudinaria manillensis
LIU Yu1, ZHANG Xiuxiu1, GUAN Delong1, WANG Xiaowen2, XU Shengquan1*
(1 Institute of Zoology, Shaanxi Normal University, Xi′an 710119, Shaanxi, China;2 Shanghai BIOZERON Biotechnology Co., Ltd., Shanghai 201800, China)
Abstract:
To reveal the effects of gut bacteria on the digestion, metabolism and other physiological functions of Hirudinaria manillensis and to provide the theoretical foundation for the aquaculture and medicinal purposes on leeches, this paper demonstrates the community structure and functions of gut bacteria of Hirudinaria manillensis using the next-generation sequencing technique. Forty OTUs were identified, which belong to 36 genera, 29 families, 24 orders, 16 classes and 7 phylums. Among the three samples, the dominant genera were Chromobacterium, Methylovorus and Jonquetella. The functions of these gut bacteria were further predicted using the software PICRUSt. The results showed that the dominent functional category was the membrane transport, followed by the carbohydrate metabolism, amino acid metabolism, cell motility, energy metabolism, DNA replication and repair, metabolism of cofactors and vitamins, xenobiotics biodegradation metabolism, cellular processes and signaling.
KeyWords:
Hirudinaria manillensis; gut bacteria; functional prediction; next-generation sequencing