自然科学版
陕西师范大学学报(自然科学版)
生命科学
丹参WRKY家族成员TRANSPARENT TESTA GLABRA2(TTG2)基因克隆与生物信息学分析
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杨树, 陈尘, 王喆之*
(西北濒危药材资源开发国家工程实验室, 教育部药用资源与天然药物化学重点实验室,陕西师范大学 生命科学学院, 陕西 西安 710119)
王喆之,男,教授,博士生导师。E-mail: zzwang@snnu.edu.cn
摘要:
从丹参转录组数据库中克隆得到丹参WRKY家族成员TRANSPARENT TESTA GLABRA2(TTG2)基因(命名为SmTTG2(Genbank注册号: KC161227)),该基因包含一个长为1 425 bp的完整开放读码框,编码475个氨基酸,DNA水平上包含3个内含子。序列分析显示,SmTTG2编码蛋白具有2个WRKY结构域和C2H2结构,属于I类WRKY家族成员,并且与黄瓜、怪柳等物种WRKY44高度相似。软件预测SmTTG2相对分子量为51.28 kDa,等电点为8.58,且其在胞内不稳定,不具跨膜结构。利用DNA步移技术克隆获得SmTTG2基因5′侧翼区序列,分析结果显示该区域除了含有TATA box和CAAT box外,还包含应答环境因子和植物激素的、调节植物发育的顺式作用元件以及MYB转录因子结合位点。实时荧光定量PCR结果表明,SmTTG2基因在丹参花中表达量最高,且随着花期显示出逐步增高的趋势;另外SmTTG2基因的表达伴随丹参种子萌发过程,提示SmTTG2基因可能参与种子的发育和萌发过程。
关键词:
丹参; SmTTG2; 生物信息学分析; 表达模式
收稿日期:
2017-03-17
中图分类号:
Q943.2文献标志码: A
文献标识码:
A
文章编号:
1672-4291(2017)04-0079-08doi:10.15983/j.cnki.jsnu.2017.04.344
基金项目:
国家自然科学基金(31670299)
Doi:
Bioinformatics and expression analysis of WRKY family member TRANSPARENT TESTA GLABRA2(TTG2)from Salvia miltiorrhiza Bunge
YANG Shu, CHEN Chen, WANG Zhezhi*
(National Engineering Laboratory for Resource Developing of Endangered ChineseCrude Drugs in Northwest of China; Key Laboratory of Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry; School of Life Sciences, Shaanxi Normal University, Xi′an 710119,Shaanxi China)
Abstract:
The WRKY gene family member SmTTG2 gene had been cloned from Salvia miltiorrhiza by screening transcriptiome data, with Genbank accession number KC161227. SmTTG2 contains a 1 425 bp coding sequence, which encodes a protein of 475-amino acid residues. The calculated molecular mass and predicted isolectric point of the complex protein were 51.28 kDa and 8.58, respectively. And the amino acid seqeucne showed that SmTTG2 belongs to class I subgroup for harbouring 2 WRKY domains and C2H2 motif. In additon, The BLAST search analysis of SmTTG2 showed an highly degree of similarity to the WRKY protein sequences of Cucumis sativus, Tamarix androssowii, and Brassica napus ect. Moreover, the promoter of SmTTG2 gene was cloned and the cis-acting regulatory elements were analyzed through PlantCARE database. The promoter analysis revealed that there are multiple putative cis-acting elements to be involved in response to environmental factors, endosperm development, plant hormones (salicylic acid, MeJA, ethylene, and auxin) responsiveness, anaerobic induction, and some MYB binding sites also found in the promoter of SmTTG2 gene. Quantitative real-time PCR indicated that the SmTTG2 gene is expressed in all tissues tested, however, the highest transcriptional level occurs in flower compared with other tissures including root, stem and leaf. In additon, SmTTG2 is highly expressed during the stages of flowers′ blooming and seeds germination, which indicated that SmTTG2 could be related to seeds devolopment.
KeyWords:
Salvia miltiorrhiza; SmTTG2; bioinformatics analysis; expression pattern