自然科学版
陕西师范大学学报(自然科学版)
生命科学
小鼠骨骼肌肌球蛋白重链生物信息学特性比较
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史银斌1,2, 孙丽君2, 奚耕思1*
(1 陕西师范大学 生命科学学院, 2 陕西师范大学 体育学院, 陕西 西安 710119)
奚耕思,女,教授,博士生导师。E-mail:xigengsi@snnu.edu.cn
摘要:
应用生物信息学软件对MyHCs蛋白不同亚型的基因序列进行比较分析,并根据比对结果建构系统进化树,对其蛋白进行结构与功能分析。结果表明:MyHC在体内以多种蛋白形式存在,其理化性质基本一致;可能的翻译后糖基化修饰多为N-糖基化,且都存在较多个位点,具有明显的Motor-domain Superfamily、MYSc、Myosin tail 1等多重保守结构域,并且N末端具有多个ATP结合位点等特异性功能区域。MyHCs蛋白二级结构均以α螺旋为主,辅以折叠和无规则卷曲等形式,其三级结构模式相似;系统进化树显示,MyHC Ⅱb 、MyHCⅠ蛋白与其他蛋白有着较大的序列差异及较远的进化关系。MyHC蛋白不同亚型结构之间的细微差异为MyHC的重塑提供可能,进而在结构上与其功能相适应。
关键词:
肌球蛋白重链; 序列比对; 结构与功能分析; 生物信息学
收稿日期:
2017-02-15
中图分类号:
Q811.4文献标志码: A
文献标识码:
A
文章编号:
1672-4291(2017)04-0071-08doi:10.15983/j.cnki.jsnu.2017.04.343
基金项目:
国家自然科学基金(11502134); 中央高校基本科研业务费专项资金(GK201504012); 陕西师范大学体育学院青年教师科研基金(20151604)
Doi:
Comparison of MyHCs of Mus musculus based on bioinformatics methods
SHI Yinbin1,2,SUN Lijun2,XI Gengsi1
(1 School of Life Sciences; 2 School of Physical Education, Shaanxi Normal University, Xi′an 710119, Shaanxi, China)
Abstract:
The isoforms of Myosin heavy chain(MyHC)expressed in adult skeletal muscle fibers were analyzed by using of bioinformatics tools, and then the evolutionary tree was built according to the result of correlative sequence alignments, the purpose of the work is to analyze structure and function of the proteins. The results show that there are various forms of MyHC in skeletal muscle of adult mice, and few differences in the physicochemical characteristics. Relatively more glycosylation sites are found and the main glycosylation sites are N-glycosylation sites. Moreover, mouse MyHCs contain multiple conservative domains such as motor-domain superfamily, MYSc, Myosin tail 1, etc.. Three states exist in their secondary structures: helix, coil and strand, their tertiary structures are similar. The phylogenetic tree results show that MyHCⅡb and MyHCⅠmight be more original compared with other MyHCs because of its larger difference of sequences and farther branch length. The plasticity of muscles becomes possible as a result of various forms of MyHC and few differences in the structure.
KeyWords:
Myosin heavy chain; sequence alignment; structure and function analysis; bioinformatics